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by

Roderic Page

on 10 February 2014

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Transcript of

Biodiversity Knowledge Graph
Citation graph
Cameron, R. D. (1997). A Universal Citation Database. First Monday, 2(4). doi:10.5210/fm.v2i4.522
Shotton, D. (2013). Publishing: Open citations. Nature, 502(7471), 295–297. doi:10.1038/502295a
Identifiers from ORCID, DOI, and ISSN, services from CrossRef
NCBI
... and a large number of third-party databases build on these identifiers
NCBI manages their own identifiers...
Markup for display
Markup for archiving
JATS XML can be redisplayed in interesting ways
Articles extracted from BHL should be archived (e.g., PubMed Central)
Do we need markup?
Just need to extract entities and assertions
Questions are paths in the knowledge graph
Bibliography
Phylogeography
Spatial search
Taxonomy
Taxonomy
(expanded)
Markup for citation linking
<Markup?/>
Easy markup use cases
Biodiversity
Knowledge
Graph

@rdmpage
archive of articles
displaying articles
citation linking

What do I want?
extract named entities, identifiers, localities
extract relationships (e.g., these names are synonyms)
in other words, extract edges in the knowledge graph
My questions:
Do we need markup, or is indexing good enough?

Markup for archiving, or better still, for version controlled editing

Does markup generate knowledge?
If so, what have we learnt to date from marked up literature?
Who builds the knowledge graph?
Full transcript