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Jmol -- ICSTI
2
Jmol -- Portal Into the Molecular World
Bob Hanson
St. Olaf College
hansonr@stolaf.edu
ICSTI 2011 Workshop
"Multimedia and Visualizations for Science"
Microsoft Research
Redmond, Washington
2/8/2011
Journals using Jmol interactively
- Biochemical Journal
- Chemical Biology (ACS)
- Crystallography Journals Online (IUCr)
- Molecular BioSystems (RSC)
- Nature
- Nature Chemical Biology
- Nature Chemistry
- Nature Structural & Molecular Biology
- Protein Science
Note to viewer:
This presentation is not not
self-contained. Click on a link
under a graphic or click just above
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Jmol applet.
Jmol
- Java applet and application
- Focus on molecular structure
- Rich internal scripting language
- Interacts with JavaScript
- Open Source project
- Highly multidisciplinary
http://stolaf.edu/depts/chemistry/mo/struc
http://www.uscibooks.com/hansonnb.htm
http://stolaf.edu/people/hansonr/mo
Jmol in the press
http://chemapps.stolaf.edu/pe/protexpl/htm/top.htm?id=1d66
http://stolaf.edu/people/hansonr/jmol/jac
more links
Jmol Examples
http://chemapps.stolaf.edu/jmol
http://chemapps.stolaf.edu/jmol/docs/examples-12/cool.htm
http://chemapps.stolaf.edu/jmol/docs/examples-12/simple.htm
http://chemagic.com/web_molecules
Chemistry
http://stolaf.edu/depts/chemistry/mo/struc
http://stolaf.edu/people/hansonr/jmol/molecules/density
Crystallography
http://stolaf.edu/people/hansonr/jmol/epcot
http://chemapps.stolaf.edu/pe/protexpl/htm/top.htm?id=1d66
Molecular Biology
http://www.rcsb.org
http://www.imb-jena.de/IMAGE.html
http://symmetry.otterbein.edu
http://chemagic.com/web_molecules
http://stolaf.edu/people/hansonr/jmol/tri.htm
Mathematics
http://stolaf.edu/people/hansonr/sudoku