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Markup for citation linking

Markup for display

JATS XML can be redisplayed in interesting ways

NCBI

Markup for archiving

Articles extracted from BHL should be archived (e.g., PubMed Central)

NCBI manages their own identifiers...

... and a large number of third-party databases build on these identifiers

<Markup?/>

Citation graph

Cameron, R. D. (1997). A Universal Citation Database. First Monday, 2(4). doi:10.5210/fm.v2i4.522

Who builds the knowledge graph?

Shotton, D. (2013). Publishing: Open citations. Nature, 502(7471), 295–297. doi:10.1038/502295a

Easy markup use cases

Questions are paths in the knowledge graph

Identifiers from ORCID, DOI, and ISSN, services from CrossRef

Bibliography

Phylogeography

  • archive of articles
  • displaying articles
  • citation linking

Taxonomy

Spatial search

Taxonomy

(expanded)

Biodiversity Knowledge Graph

What do I want?

Do we need markup?

Just need to extract entities and assertions

  • extract named entities, identifiers, localities
  • extract relationships (e.g., these names are synonyms)
  • in other words, extract edges in the knowledge graph

My questions:

@rdmpage

Do we need markup, or is indexing good enough?

Markup for archiving, or better still, for version controlled editing

Does markup generate knowledge?

If so, what have we learnt to date from marked up literature?

Biodiversity

Knowledge

Graph

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