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Enrichment analysis using DAVID

how to use DAVID Producer by National Formosa University Biology Algorithm lab at 2012/12

wu min-you

on 7 January 2013

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Transcript of Enrichment analysis using DAVID

by NFU Biology Algorithm lab Enrichment analysis using DAVID http://david.abcc.ncifcrf.gov/home.jsp What is DAVID DAVID Tools Step1:Upload the Gene list for DAVID from Start Analysis Functional Annotation Producer by National Formosa University Biology Algorithm lab at 2012/12 Outline
1. What is DAVID
2. DAVID Tools
3. Tools Demo DAVID is a Bioinformatics Database, and it is also provides many tools to analysis the gene data. 1. Functional Annotation
2. Gene Function Classification
3. Gene ID Conversion
4. Gene Name Batch Viewer
5. NIAID Pathogen Annotion Thanks For Watching Functional Annotation Upload list or file to DAVID Select Identifier and Gene List Step2&3: Upload and select list type The gene list number from users upload Upload list file name Functional Annotation Successfully submitted gene list Choice what kind tools you want
(ex:Funtional Annotation Tool) Individual view report:
Percentage (involved genes/total genes)
Gene from your list
Single Chart Report for ONLY this annotation category View and select annotation categories of your interests. (7 of them is pre-selected as default) Clustered or non-redundant chart report
Linear or redundant chart report
Table report Combined view report of annotation terms for ALL selected annotation categories above: Clustering options and stringency The overall enrichment score for the group based on the EASE score of each term members. The higher, the more enriched. Minimum number of genes for the corresponding term Maximum EASE Score/P-value Original database/resource where the terms orient Enriched terms associated with your gene list Related term search Modified Fisher Exact P-value, EASE Score. The smaller, the more enriched. Gene Name Annotation terms select Gene ID Conversion Tool to change ID Selete ID you want and dress Submit to Conversion Tool 1 2 The data form user upload Input(GeneID) and
output data(UniportID)
information Tools Demo
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